1. Subfamily Atherininae Risso, 1827
   1. Genus Atherina Linnaeus, 1758
   2. Genus Atherinason Whitley, 1934
   3. Genus Atherinosoma Castelnau, 1872
   4. Genus Kestratherina Pavlov, Ivantsoff, Last & Crowley, 1988
   5. Genus Leptatherina Pavlov, Ivantsoff, Last & Crowley, 1988
   6. Genus Hapsetia Bonaparte, 1836 accepted as Hepsetia Bonaparte, 1836 accepted as Atherina Linnaeus, 1758 (unaccepted > misspelling - incorrect subsequent spelling)
   7. Genus Hepsetia Bonaparte, 1836 accepted as Atherina Linnaeus, 1758 (unaccepted > junior subjective synonym)
   8. Genus Pranesella Whitley, 1934 accepted as Atherinosoma Castelnau, 1872
   9. Genus Taeniomembras Ogilby, 1898 accepted as Atherinosoma Castelnau, 1872
2. Subfamily Atherinomorinae Dyer & Chernoff, 1996
   1. Genus Atherinomorus Fowler, 1903
   2. Genus Doboatherina Sasaki & Kimura, 2019
   3. Genus Hypoatherina Schultz, 1948
   4. Genus Teramulus Smith, 1965
   5. Genus Atherinamorous accepted as Atherinomorus Fowler, 1903 (misspelling)
   6. Genus Atherinimorus accepted as Atherinomorus Fowler, 1903 (misspelling)
   7. Genus Atherinomorphus accepted as Atherinomorus Fowler, 1903 (misspelling)
   8. Genus Hypoatheria accepted as Hypoatherina Schultz, 1948 (misspelling)
   9. Genus Hypotherina accepted as Hypoatherina Schultz, 1948 (unaccepted > misspelling - incorrect subsequent spelling)
   10. Genus Pranesus Whitley, 1930 accepted as Atherinomorus Fowler, 1903
   11. Genus Stenatherina Schultz, 1948 accepted as Hypoatherina Schultz, 1948 (unaccepted > junior subjective synonym)
3. Subfamily Craterocephalinae Dyer & Chernoff, 1996
   1. Genus Craterocephalus McCulloch, 1912
   2. Genus Allanetta Whitley, 1943 accepted as Craterocephalus McCulloch, 1912 (unaccepted > junior subjective synonym)
4. Subfamily Atherioninae Schultz, 1948 accepted as Atherionidae Schultz, 1948 (unaccepted > superseded rank)
5. Subfamily Medidiinae Schultz, 1948 accepted as Menidiinae Schultz, 1948 (unaccepted > misspelling - incorrect subsequent spelling)

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