Achnanthes brevipes var. angustata (Greville) Cleve, 1895 (new combination reference)
Achnanthes brevipes var. leudugeri (Tempère & Brun in Brun & Tempère) Cleve, 1895 accepted as Achnanthes leudugeri Tempère & Brun in Brun & Tempère, 1889 (new combination reference)
Achnanthes brevipes var. parvula (Kützing) Cleve, 1895 accepted as Achnanthes parvula Kützing, 1844 (new combination reference)
Amphora angusta var. diducta (Schmidt in Schmidt et al.) Cleve, 1895 accepted as Amphora diducta Schmidt in Schmidt et al., 1875 (new combination reference)
Amphora angusta var. eulensteinii (Grunow in Schmidt et al.) Cleve, 1895 accepted as Amphora eulensteinii var. eulensteinii Grunow in Schmidt et al., 1875 (new combination reference)
Amphora arenicola var. arenicola Cleve, 1896 (original description)
Amphora arenicola var. major Cleve, 1895 (original description)
Amphora arenicola var. subaequalis Cleve, 1895 (original description)
Amphora eunotia var. gigantea (Grunow) Cleve, 1895 (original description)
Amphora gigantea var. fusca (A.Schmidt) Cleve, 1895 accepted as Amphora fusca f. fusca Schmidt in Schmidt et al., 1875 (new combination reference)
Amphora lunula Cleve, 1895 (original description)
Amphora margaritifera Cleve, 1895 (original description)
Amphora obtusa var. oceanica (Castracane) Cleve, 1895 accepted as Amphora oceanica Castracane, 1886 (new combination reference)
Amphora ostrearia var. vitrea Cleve, 1895 accepted as Amphora vitrea Cleve, 1868 (new combination reference)
Campyloneis grevillei var. regalis (Greville) Cleve, 1895 accepted as Cocconeis regalis Greville, 1859 (new combination reference)
Cocconeis heteroidea var. curvirotunda (Tempère & J.-J.Brun) Cleve, 1895 accepted as Cocconeis pellucida var. curvirotunda (Tempère & Brun) M.De Stefano, 2005 (new combination reference)
Cocconeis placentula var. euglypta (Ehrenberg) Grunow, 1884 accepted as Cocconeis euglypta Ehrenberg, 1854 (new combination reference)
Cocconeis placentula var. lineata (Ehrenberg) van Heurck, 1885 accepted as Cocconeis lineata Ehrenberg, 1843 (new combination reference)
Cocconeis scutellum var. parva (Grunow) Cleve, 1895 accepted as Cocconeis scutellum f. parva Grunow, 1880 (new combination reference)
Mastogloia elliptica (C.Agardh) Cleve, 1893 (new combination reference)
Mastogloia elliptica var. dansei (Thwaites) Cleve, 1895 accepted as Dickieia danseii Thwaites, 1848 (new combination reference)
Mastogloia fallax Cleve, 1895 (original description)
Mastogloia inaequalis Cleve, 1895 (original description)
Mastogloia latericia (A.Schmidt) Cleve, 1895 accepted as Orthoneis latericia Schmidt in Schmidt et al., 1893 (new combination reference)
Mastogloia paradoxa Grunow, 1878 (original description)
Mastogloia pulchella Cleve, 1895 (original description)
Navicula australica (Schmidt in Schmidt et al.) Cleve, 1895 accepted as Navicula lyra var. australica Schmidt in Schmidt et al., 1874 (new combination reference)
Navicula bahusiensis (Grunow) Cleve, 1895 accepted as Navicula minuscula var. bahusiensis Grunow, 1880 (new combination reference)
Navicula cancellata var. retusa (Brébisson) Cleve, 1895 accepted as Navicula retusa var. retusa Brébisson, 1854 (new combination reference)
Navicula clavata var. indica (Greville) Cleve, 1896 accepted as Navicula indica f. indica Greville, 1862 (new combination reference)
Navicula corymbosa (Agardh) Cleve, 1896 (new combination reference)
Navicula directa var. incus (Grunow) Cleve, 1896 accepted as Navicula incus var. incus Grunow in Schmidt et al., 1876 (new combination reference)
Navicula directa var. javanica Cleve, 1895 (original description)
Navicula directa var. remota (Grunow) Cleve, 1895 accepted as Navicula remota Grunow, 1880 (new combination reference)
Navicula h-album Cleve, 1894 (original description)
Navicula hennedyi var. nebulosa (Gregory) Cleve, 1895 accepted as Navicula nebulosa Gregory, 1857 (new combination reference)
Navicula humerosa var. constricta Cleve, 1896 (original description)
Navicula mollis (W.Smith) Cleve, 1896 (new combination reference)
Navicula monilifera f. monilifera Cleve, 1895 (original description)
Navicula my Cleve, 1895 (original description)
Navicula rho Cleve, 1895 (original description)
Navicula spectabilis var. excavata (Greville) Cleve, 1895 accepted as Navicula excavata var. excavata Greville, 1866 (new combination reference)
Pinnularia ambigua var. ambigua Cleve, 1895 (original description)
Pinnularia bistriata (Leuduger-Fortmorel) Cleve, 1895 accepted as Stauroneis bistriata Leuduger-Fortmorel, 1879 (new combination reference)