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Calling the Mangroves webservice from R

This example script was written in R version 3.4.4, for newer/older versions just try and see if it works ( https://www.r-project.org/).
Available for MacOS X, Linux & Windows.

Paste the following code in the R Console (this is just an example)

See all available functions at https://marinespecies.org/mangroves/rest. Just click on the function you want to explore and "try it out"!

# Install the required packages (comment if needed)
install.packages("jsonlite", repos="http://cran.r-project.org")
install.packages("httr")

# Use the libraries
library(jsonlite) #https://cran.r-project.org/web/packages/jsonlite/
library(httr)

# Fill in the AphiaID you need
AphiaID <- 127160

# Build the URL to get the data from
url <- sprintf("https://marinespecies.org/mangroves/rest/AphiaClassificationByAphiaID/%d", AphiaID);

# Get the actual data from the URL
classificationTree <- fromJSON(url)

# Walk the classification tree
currentTreeItem = classificationTree
while (!is.null(currentTreeItem )) {
    print(sprintf("ID: %d, RANK: %s, ScientificName: %s",
        currentTreeItem$AphiaID,
        currentTreeItem$rank,
        currentTreeItem$scientificname
    ));
    # You can access the variables individually
    # print(currentTreeItem$AphiaID);
    # print(currentTreeItem$scientificname);
    # print(currentTreeItem$rank);

    # Get next item in the tree
    currentTreeItem <- currentTreeItem$child;
}Copy

Download this example.
Download elaborate example (match names).

Note there is a complete R package available that you can use. See the rOpenScilibrary 'worrms', available here: https://github.com/ropensci/worrms

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