- Echinoderes cavernus Sørensen, Jörgensen & Boesgaard, 2000
- Echinoderes dujardinii Claparède, 1863
- Echinoderes gama Yamasaki, Fujimoto & Tanaka, 2020
- Echinoderes kajiharai Yamasaki, Fujimoto & Tanaka, 2020
- Echinoderes uozumii Yamasaki, Fujimoto & Tanaka, 2020
- Meristoderes macracanthus Herranz, Thormar, Benito, Sánchez & Pardos, 2012