- Gymnodinium aureolum (E.M.Hulburt) Gert Hansen, 2000
- Gymnodinium bohemicum Fott, 1938
- Gymnodinium colymbeticum T.M.Harris, 1940
- Gymnodinium galeatum J.Larsen, 1994
- Gymnodinium palustre A.J.Schilling, 1891
- Gymnodinium pseudopalustre J.Schiller, 1932 accepted as Biecheleria pseudopalustris (J.Schiller) Moestrup, K.Lindberg & Daugbjerg, 2009
- Gymnodinium pulvisculus (Ehrenberg) Pouchet, 1885 accepted as Oodinium pouchetii (Lemmermann) Chatton, 1912
- Torodinium robustum Kofoid & Swezy, 1921